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Huang CY. Dietary plant and animal protein sources oppositely modulate fecal Bilophila and Lachnoclostridium in vegetarians and omnivores. Microbiol Spectr. 2022;10(2):e0204721. https://pubmed.ncbi.nlm.nih.gov/35285706/

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Singh RK, Chang HW, Yan D, et al. Influence of diet on the gut microbiome and implications for human health. J Transl Med. 2017;15(1):73. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5385025/

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Franco-de-Moraes AC, de Almeida-Pititto B, da Rocha Fernandes G, Gomes EP, da Costa Pereira A, Ferreira SRG. Worse inflammatory profile in omnivores than in vegetarians associates with the gut microbiota composition. Diabetol Metab Syndr. 2017;9:62. https://pubmed.ncbi.nlm.nih.gov/28814977/

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Kim MS, Hwang SS, Park EJ, Bae JW. Strict vegetarian diet improves the risk factors associated with metabolic diseases by modulating gut microbiota and reducing intestinal inflammation. Environ Microbiol Rep. 2013;5(5):765–75. https://pubmed.ncbi.nlm.nih.gov/24115628/

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Zmora N, Suez J, Elinav E. You are what you eat: diet, health and the gut microbiota. Nat Rev Gastroenterol Hepatol. 2019;16(1):35–56. https://pubmed.ncbi.nlm.nih.gov/30262901/

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Asnicar F, Berry SE, Valdes AM, et al. Microbiome connections with host metabolism and habitual diet from 1,098 deeply phenotyped individuals. Nat Med. 2021;27(2):321–32. https://pubmed.ncbi.nlm.nih.gov/33432175/

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De Filippis F, Pellegrini N, Vannini L, et al. High-level adherence to a Mediterranean diet beneficially impacts the gut microbiota and associated metabolome. Gut. 2016;65(11):1812–21. https://pubmed.ncbi.nlm.nih.gov/26416813/

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Freeland KR, Wilson C, Wolever TM. Adaptation of colonic fermentation and glucagon-like peptide-1 secretion with increased wheat fibre intake for 1 year in hyperinsulinaemic human subjects. Br J Nutr. 2010;103(1):82–90. https://pubmed.ncbi.nlm.nih.gov/19664300/

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Wu GD, Compher C, Chen EZ, et al. Comparative metabolomics in vegans and omnivores reveal constraints on diet-dependent gut microbiota metabolite production. Gut. 2016;65(1):63–72. https://pubmed.ncbi.nlm.nih.gov/25431456/

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Institute of Medicine. Dietary Reference Intakes for Energy, Carbohydrate, Fiber, Fat, Fatty Acids, Cholesterol, Protein and Amino Acids. National Academy Press; 2005. https://worldcat.org/title/57373786

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Jew S, Abumweis SS, Jones PJ. Evolution of the human diet: linking our ancestral diet to modern functional foods as a means of chronic disease prevention. J Med Food. 2009;12(5):925–34. https://pubmed.ncbi.nlm.nih.gov/19857053/

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Leach JD, Sobolik KD. High dietary intake of prebiotic inulin-type fructans in the prehistoric Chihuahuan Desert. Br J Nutr. 2010;103(11):1558–61. https://pubmed.ncbi.nlm.nih.gov/20416127/

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Institute of Medicine (U.S.). Dietary Reference Intakes: Proposed Definition of Dietary Fiber. National Academies Press; 2001. https://pubmed.ncbi.nlm.nih.gov/25057569/

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Burkitt DP, Meisner P. How to manage constipation with high-fiber diet. Geriatrics. 1979;34(2):33–5 https://pubmed.ncbi.nlm.nih.gov/104901/

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Requena T, Martínez-Cuesta MC, Peláez C. Diet and microbiota linked in health and disease. Food Funct. 2018;9(2):688–704. https://pubmed.ncbi.nlm.nih.gov/29410981/

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Han M, Wang C, Liu P, Li D, Li Y, Ma X. Dietary fiber gap and host gut microbiota. Protein Pept Lett. 2017;24(5):388–96. https://pubmed.ncbi.nlm.nih.gov/28219317/

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Venkatakrishnan A, Holzknecht ZE, Holzknecht R, et al. Evolution of bacteria in the human gut in response to changing environments: an invisible player in the game of health. Comput Struct Biotechnol J. 2021;19:752–8. https://pubmed.ncbi.nlm.nih.gov/33552447/

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Hamaker BR, Cantu-Jungles TM. Discrete fiber structures dictate human gut bacteria outcomes. Trends Endocrinol Metab. 2020;31(11):803–5. https://pubmed.ncbi.nlm.nih.gov/32448722/

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Tap J, Furet JP, Bensaada M, et al. Gut microbiota richness promotes its stability upon increased dietary fibre intake in healthy adults. Environ Microbiol. 2015;17(12):4954–64. https://pubmed.ncbi.nlm.nih.gov/26235304/

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Walter J, Martínez I, Rose DJ. Holobiont nutrition: considering the role of the gastrointestinal microbiota in the health benefits of whole grains. Gut Microbes. 2013;4(4):340–6. https://pubmed.ncbi.nlm.nih.gov/23645316/

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Toribio-Mateas M. Harnessing the power of microbiome assessment tools as part of neuroprotective nutrition and lifestyle medicine interventions. Microorganisms. 2018;6(2):35. https://pubmed.ncbi.nlm.nih.gov/29693607/

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McRorie J. Clinical data support that psyllium is not fermented in the gut. Am J Gastroenterol. 2013;108(9):1541. https://pubmed.ncbi.nlm.nih.gov/24005363/

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Almeida A, Mitchell AL, Boland M, et al. A new genomic blueprint of the human gut microbiota. Nature. 2019;568(7753):499–504. https://pubmed.ncbi.nlm.nih.gov/30745586/

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Pereira FC, Berry D. Microbial nutrient niches in the gut. Environ Microbiol. 2017;19(4):1366–78. https://pubmed.ncbi.nlm.nih.gov/28035742/

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O’Keefe SJD. The need to reassess dietary fiber requirements in healthy and critically ill patients. Gastroenterol Clin North Am. 2018;47(1):219–29. https://pubmed.ncbi.nlm.nih.gov/29413014/

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Swain Ewald HA, Ewald PW. Natural selection, the microbiome, and public health. Yale J Biol Med. 2018;91(4):445–55. https://pubmed.ncbi.nlm.nih.gov/30588210/

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Dewulf EM, Cani PD, Claus SP, et al. Insight into the prebiotic concept: lessons from an exploratory, double blind intervention study with inulin-type fructans in obese women. Gut. 2013;62(8):1112–21. https://pubmed.ncbi.nlm.nih.gov/23135760/

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Hill P, Muir JG, Gibson PR. Controversies and recent developments of the low-FODMAP diet. Gastroenterol Hepatol (N Y). 2017;13(1):36–45. https://pubmed.ncbi.nlm.nih.gov/28420945/

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Yadav BS, Sharma A, Yadav RB. Studies on effect of multiple heating/cooling cycles on the resistant starch formation in cereals, legumes and tubers. Int J Food Sci Nutr. 2009;60 Suppl 4:258–72. https://pubmed.ncbi.nlm.nih.gov/19562607/

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Fernando WMU, Hill JE, Zello GA, Tyler RT, Dahl WJ, Van Kessel AG. Diets supplemented with chickpea or its main oligosaccharide component raffinose modify faecal microbial composition in healthy adults. Benef Microbes. 2010;1(2):197–207. https://pubmed.ncbi.nlm.nih.gov/21831757/

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Jin S, Je Y. Nuts and legumes consumption and risk of colorectal cancer: a systematic review and meta-analysis. Eur J Epidemiol. 2022;37(6):569–85. https://pubmed.ncbi.nlm.nih.gov/35622305/

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Hangen L, Bennink MR. Consumption of black beans and navy beans (Phaseolus vulgaris) reduced azoxymethane-induced colon cancer in rats. Nutr Cancer. 2002;44(1):60–5. https://pubmed.ncbi.nlm.nih.gov/12672642/

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Holscher HD. Diet affects the gastrointestinal microbiota

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